Publications

Journal papers

2016

Ovidiu Pârvu, David Gilbert, A Novel Method to Verify Multilevel Computational Models of Biological Systems Using Multiscale Spatio-Temporal Meta Model Checking, PLOS ONE, vol. 11, no. 5, pp. 1-43, May 2016 [source code repository, website].

2015

Ovidiu Pârvu, David Gilbert, Monika Heiner, Fei Liu, Nigel Saunders and Simon Shaw, Spatial-temporal modelling and analysis of bacterial colonies with phase variable genes, ACM Transactions On Modeling and Computer Simulation, vol. 25, no. 2, pp. 13:1–13:25, May 2015 [website].

Marcel Pârvu, Laurian Vlase, Alina Elena Pârvu, Oana Roșca-Casian, Ana-Maria Gheldiu, and Ovidiu Pârvu, Phenolic Compounds and Antifungal Activity of Hedera helix L. (Ivy) Flowers and Fruits, Notulae Botanicae Horti Agrobotanici Cluj-Napoca, vol. 43, no. 1, pp. 53-58, May 2015.

2014

Ovidiu Pârvu and David Gilbert, Automatic validation of computational models using pseudo-3D spatio-temporal model checking, BMC Systems Biology, vol. 8, no. 1, pp. 124, December 2014 [website].

Ovidiu Pârvu and David Gilbert, Implementation of linear minimum area enclosing triangle algorithm, Computational and Applied Mathematics, Springer, pp. 1–16, November 2014 [source code repository, website].

Alina Ormenișan, Cristian Dalai, Camelia Alb, Alina Elena Pârvu, Sandu Florin Alb, Ovidiu Pârvu, Ciprian Silaghi and Camelia Dalai, Stresul nitrooxidativ în paradontita cronică şi insuficienţa renală cronică la şobolan, Revista Romana de Medicina Veterinara, vol. 24, no. 4, 2014.

Alina Elena Pârvu, Ştefan Ţălu, Marian Taulescu, Andreea Bota, Florinela Cătoi, Constantin Crăciun, Camelia Alb, Ovidiu Pârvu and Sandu Alb, Fractal analysis of ibuprofen effect on experimental dog peri-implantitis, Implant Dentistry, 23 (3), pp. 295-304, June 2014.

Silvia Răușanu, Crina Groșan, Zujian Wu, Ovidiu Pârvu, Ramona Stoica and David Gilbert, Computational models for inferring biochemical networks, Neural Computing and Applications, Springer, pp. 1–13, June 2014.

2013

Marcel Pârvu, Laurian Vlase, Laszlo Fodorpataki, Ovidiu Pârvu, Oana Roșca-Casian, Csaba Bartha, Lucian Barbu-Tudoran and Alina Elena Pârvu, Chemical Composition of Celandine (Chelidonium majus L.) Extract and its Effects on Botrytis tulipae (Lib.) Lind Fungus and the Tulip, Notulae Botanicae Horti Agrobotanici Cluj-Napoca, vol. 41, no. 2, pp. 414–426, Dec. 2013.

Marcel Pârvu, Alina Elena Pârvu, Lucian Barbu-Tudoran, Oana Roşca-Casian, Laurian Vlase, Maria Rozalia Danciu and Ovidiu Pârvu, In vitro effects of Allium obliquum extract on the growth and ultrastructure of Botrytis paeoniae, Journal of Medicinal Plants Research, 7(17), pp. 1138-1145, 2013, DOI: 10.5897/JMPR12.173.

2012

Ovidiu Pârvu and Sanda Maria Dragoş, Building Intelligent Knowledge Management Systems, Studia Universitatis Babes-Bolyai, Series Informatica, Vol. LVII, Number 4, pp. 110-121, December 2012.

2011

Marcel Pârvu, Alina Elena Pârvu, Laurian Vlase, Oana Roşca-Casian, Ovidiu Pârvu and Mihai Puşcaş, Allicin and alliin content and antifungal activity of Allium senescens L. ssp. montanum (F. W. Schmidt) Holub ethanol extract, Journal of Medicinal Plants Research, Vol. 5 (29), pp. 6544–6549, 2011, DOI: 10.5897/JMPR11.818.

Marcel Pârvu, Alina Elena Pârvu, Laurian Vlase, Oana Roşca-Casian and Ovidiu Pârvu, Antifungal properties of Allium ursinum L. ethanol extract, Journal of Medicinal Plants Research, Vol. 5 (10), pp. 2041–2046, 2011.

Conference papers

2013

Ovidiu Pârvu, David Gilbert, Monika Heiner, Fei Liu, and Nigel Saunders, Modelling and Analysis of Phase Variation in Bacterial Colony Growth, In Proceedings Computational Methods in Systems Biology, 11th International Conference CMSB 2013, Springer, LNCS, vol.8130, 2013, pp 78-91 [supplementary materials].

Silvia Răușanu, Crina Groșan, Zujian Wu, Ovidiu Pârvu and David Gilbert, Evolving biochemical systems, In Proceedings IEEE Congress on Evolutionary Computation, Cancun, Mexico, 20-23 June, 2013, pp. 1602-1609.

2010

Marcel Pârvu, Lucian Barbu-Tudoran, Laurian Vlase, S-C. Tripon, Ovidiu Pârvu, Oana Roşca-Casian, Mihai Puşcaş, Modificări ultrastructurale în conidii şi hife de Botrytis paeoniae tratate cu extract vegetal de Allium obliquum, Sesiunea de Comunicări ştiinţifice Grădina Botanică Dimitrie Brândză, 5th-6th of November, 2010, pg. 4.

Oral presentations

2014

Ovidiu Pârvu, Formally validating multidimensional computational models, 14481 Dagstuhl seminar on Multiscale Spatial Computational Systems Biology, 23rd – 28th of November, 2014, Dagstuhl, Germany.

Ovidiu Pârvu and David Gilbert, Multilevel spatial modelling using Coloured Petri Nets, 14481 Dagstuhl seminar on Multiscale Spatial Computational Systems Biology, 23rd – 28th of November, 2014, Dagstuhl, Germany.

Ovidiu Pârvu, Formal validation of multidimensional computational models, International Study Group for Systems Biology (ISGSB) 2014 meeting, Durham, United Kingdom, 1st – 5th of September, 2014 (best presentation award).

Ovidiu Pârvu, Spatial modelling and analysis of biological systems, PhD student conference on Complex Systems (CCS) 2014, Brunel University, London, United Kingdom, 27th of June, 2014 (invited speaker).

2013

Ovidiu Pârvu, Multidimensional model verification, Doctoral colloquium of the Conference On Spatial Information Theory (COSIT) 2013, Scarborough, United Kingdom, 2nd - 6th September 2013 (best presentation award).

Presentation at the Petri Net Course Tutorial: Petri nets for multiscale systems biology workshop, University of Milano-Bicocca, Milan, Italy, 25th of June 2013.

Assisted prof. David Gilbert, Brunel University, at the Erasmus Intensive Programme Modelling in Systems and Synthetic Biology 2013 (MoSyB 2013), Latvia University of Agriculture, Jelgava, Latvia, 17th of June 2013.

2012

Ovidiu Pârvu, Building intelligent knowledge management system, Sesiunea de Comunicări științifice ale studenților, Babeș-Bolyai University, Cluj-Napoca, 21th of June 2012.

Ovidiu Pârvu, Krisztián Szabó, Barnabás Székely and Rareș Dragomir, EcoSorter - The intelligent ecological robot, Sesiunea de Comunicări științifice ale studenților, Babeș-Bolyai University, Cluj-Napoca, 21th of June 2012.

Ovidiu Pârvu and Sanda Dragoș, Interactive and intelligent doctorate theses administration platform, Proceedings of the National Symposium ZAC2012, Babeș-Bolyai University, Cluj-Napoca, 30th of May, 2012.

Posters

2013

Ovidiu Pârvu, David Gilbert, Monika Heiner, Fei Liu, Nigel Saunders, A systems biology approach to modelling growth and phase variation in bacterial colonies, Annual CLMS Symposium 2013, UCL Bloomsbury Campus, UCL, London, United Kingdom, 28th of June 2013 (3rd best poster award).

Ovidiu Pârvu, David Gilbert, Nigel Saunders, Spatial modelling and analysis of phase variation in bacterial colonies, Brunel University Research Student Poster Conference, 30th of April, 2013.